| E. Hyndman | MID | Out indefinitely | Broken Leg | Broken Leg | Aug 27 |
| E. Rigoni | A | Out | Hamstring | Hamstring | Mar 17 |
| Bojan | A | Out indefinitely | Hamstring | Hamstring | Oct 16 |
| V. Wanyama | MID | Out indefinitely | Knee Injury | Knee Injury | Jan 29 |
| Maximiliano Urruti | A | Doubtful | None | Urruti is doubtful | Oct 6 |
| Doneil Henry | DEF | Out indefinitely | ACL Knee Ligament Injury | ACL Knee Ligament Injury | Feb 25 |
| C. Fuchs | DEF | Out indefinitely | Groin/Pelvis Injury | Groin/Pelvis Injury | Sep 14 |
| N. Byrne | MID | Doubtful | None | Byrne is doubtful | Apr 12 |
| Bastian Schweinsteiger | MID | Out indefinitely | Knock | Knock | Oct 13 |
| R. Berič | A | Out indefinitely | Thigh Muscle Strain | Thigh Muscle Strain | Dec 2 |
| N. Gaitán | MID | Out indefinitely | Ankle/Foot Injury | Ankle/Foot Injury | Sep 11 |
| Álvaro Medrán Just | MID | Out indefinitely | Back Injury | Back Injury | May 3 |
| S. Nicholson | MID | Out indefinitely | None | Nicholson is injured | Oct 21 |
| J. Lewis | A | Out indefinitely | None | Lewis is injured | Apr 5 |
| Juan Camilo Hernández Suárez | A | Out | Thigh Muscle Strain | Thigh Muscle Strain | May 22 |
| B. Smith | DEF | Out indefinitely | Hip/Thigh Injury | Hip/Thigh Injury | Jan 12 |
| C. Benteke | A | Out indefinitely | Ankle/Foot Injury | Ankle/Foot Injury | Jun 7 |
| W. Rooney | A | Out indefinitely | Knee Injury | Knee Injury | May 28 |
| Steven Birnbaum | DEF | Out indefinitely | None | Birnbaum is injured | Apr 13 |
| G. Cameron | DEF | Out | Concussion | Concussion | Dec 1 |
| M. Deplagne | DEF | Out indefinitely | Knock | Knock | Jun 4 |
| S. de Jong | MID | Out indefinitely | Calf Muscle Strain | Calf Muscle Strain | Jun 5 |
| C. Stanko | MID | Out indefinitely | Knee Injury | Knee Injury | Jan 16 |
| Paxton Pomykal | MID | Out indefinitely | None | Pomykal is injured | Mar 1 |
| M. Farfan | DEF | Out indefinitely | None | Farfan is injured | Apr 13 |
| F. Quignón | MID | Doubtful | None | Quignon is doubtful | Nov 10 |
| A. Velasco | A | Out indefinitely | None | Velasco is injured | Nov 10 |
| J. Rodríguez | MID | Doubtful | None | Rodriguez is doubtful | Apr 13 |
| N. Quiñónes | A | Out indefinitely | None | Quinones is injured | Mar 22 |
| K. Gibbs | DEF | Out | Back Injury | Back Injury | Feb 27 |
| Blaise Matuidi | MID | Out indefinitely | Groin Strain | Groin Strain | Mar 20 |
| Kelvin Walther Gianini Leerdam | DEF | Out indefinitely | Knee Injury | Knee Injury | May 1 |
| R. Robinson | A | Out indefinitely | None | Robinson is injured | Feb 24 |
| I. Fray | DEF | Out indefinitely | None | Fray is injured | Feb 24 |
| Douglas Costa | MID | Out indefinitely | Metatarsal Fracture | Metatarsal Fracture | Feb 10 |
| R. Alessandrini | MID | Out indefinitely | MCL Knee Ligament Injury | MCL Knee Ligament Injury | Mar 6 |
| N. DePuy | DEF | Out indefinitely | None | DePuy is injured | Sep 23 |
| Tello | A | Out indefinitely | Knock | Knock | Apr 4 |
| D. Bouanga | A | Out | Suspended | Suspended | Jan 4 |
| K. Vermeer | GK | Out indefinitely | Knock | Knock | Dec 16 |
| Kwadwo Opoku | forward | Out indefinitely | None | Opoku is injured | Mar 10 |
| T. Miller | GK | Out indefinitely | None | Miller is injured | Apr 13 |
| Z. Valentin | DEF | Out indefinitely | None | Valentin is injured | Apr 5 |
| Vadim Demidov | DEF | Out indefinitely | Hamstring | Hamstring | Mar 9 |
| Emanuel Reynoso | MID | Out | None | Reynoso is out | Apr 13 |
| J. Rosales | MID | Suspended | None | Rosales is suspended | Apr 13 |
| Randall Enrique Leal Arley | MID | Out indefinitely | None | Leal is injured | Mar 30 |
| Brou Benjamin Angoua | DEF | Out indefinitely | Knock | Knock | Mar 19 |
| Wilfrid Jaures Kaptoum | MID | Out indefinitely | Hamstring | Hamstring | Oct 27 |
| Damian Rivera | midfielder | Out indefinitely | None | Rivera is injured | Sep 30 |
| C. Burke | A | Out indefinitely | None | Burke is injured | Apr 5 |
| S. Ngoma | A | Out indefinitely | None | Ngoma is injured | Apr 13 |
| Larrys Mabiala Destin | DEF | Out indefinitely | None | Mabiala is injured | Apr 12 |
| M. Loría | A | Out indefinitely | None | Loria is injured | Mar 1 |
| Zac McGraw | defender | Out indefinitely | None | McGraw is injured | Apr 12 |
| Bobby Shou Wood | A | Out indefinitely | Knee Injury | Knee Injury | Jun 10 |
| Stephen Obayan Sunday | MID | Out indefinitely | Suspended | Suspended | Feb 24 |
| Marcelo Andrés Silva Fernández | DEF | Out indefinitely | None | Silva is injured | Apr 13 |
| P. Ruíz | MID | Out indefinitely | None | Ruiz is injured | Mar 22 |
| E. Holt | DEF | Out indefinitely | None | Holt is injured | Apr 13 |
| J. Mensah | DEF | Doubtful | None | Mensah is doubtful | Apr 13 |
| James Marcinkowski | GK | Out indefinitely | None | Marcinkowski is injured | Oct 21 |
| M. López | DEF | Out indefinitely | Knock | Knock | Aug 28 |
| Víctor Rodríguez Romero | MID | Out indefinitely | Knock | Knock | Feb 28 |
| R. Walter | MID | Out | Ankle Ligaments | Ankle Ligaments | Oct 14 |
| N. Radoja | MID | Out indefinitely | Hamstring | Hamstring | Mar 7 |
| N. Isimat-Mirin | DEF | Out | Knee Injury | Knee Injury | Feb 15 |
| C. Salcedo | DEF | Out | Foot Injury | Foot Injury | Nov 29 |
| Eriq Zavaleta | DEF | Out indefinitely | None | Zavaleta is injured | Apr 13 |
| Russell Teibert | MID | Out indefinitely | None | Teibert is injured | Nov 4 |
| A. Cubas | MID | Out | Thigh Muscle Strain | Thigh Muscle Strain | May 4 |
| Thomas Hasal | goalkeeper | Out indefinitely | None | Hasal is injured | Aug 26 |